PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000663564
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 1075aa    MW: 121400 Da    PI: 5.1792
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000663564genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.89.9e-28271681128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 
                    lp+G++F+P+d el+ e+L++k+   +    + ++e+i++++    iy  +P++Lp + +++ ++++fF+k+ ++yatg+rk+r+        +++
  MDP0000663564  27 LPVGVKFDPSDGELL-EHLAAKCGVGNsqphMFIAEFIPTLEgdngIYCDHPENLPGA-TKDGSSIHFFHKTMNAYATGQRKRRKvdsqrsvaAEN 120
                    799************.9999998766645552333345554233459*********44.4567899******************868888887779 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+k++++  +  +g kk++v+y  +++ +k+ek +Wvmh+y+l
  MDP0000663564 121 VRWHKTGKTKALIE--NGIKGWKKIMVLYksSKKGSKAEKMNWVMHQYHL 168
                    99**********99..6689*********4434677889*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3117187IPR003441NAC domain
PROSITE profilePS5100530.11127187IPR003441NAC domain
PfamPF023656.7E-1328168IPR003441NAC domain
PROSITE profilePS5129514.103584683IPR001890RNA-binding, CRM domain
SuperFamilySSF754711.15E-14585659IPR001890RNA-binding, CRM domain
PfamPF019855.2E-14586657IPR001890RNA-binding, CRM domain
Gene3DG3DSA:3.30.110.602.8E-10586658IPR001890RNA-binding, CRM domain
SMARTSM011031.6E-10586661IPR001890RNA-binding, CRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1075 aa     Download sequence    Send to blast
MSVFALFNXT GNVKWMIIWV LSEWPGLPVG VKFDPSDGEL LEHLAAKCGV GNSQPHMFIA  60
EFIPTLEGDN GIYCDHPENL PGATKDGSSI HFFHKTMNAY ATGQRKRRKV DSQRSVAAEN  120
VRWHKTGKTK ALIENGIKGW KKIMVLYKSS KKGSKAEKMN WVMHQYHLGA EDDEKEGEYV  180
VSKIFYQQHK QSETNDNNVV VEDSDVNALQ TSPRTPVTNP PIPPRPGKSV WCDDVPDEAV  240
LPSSSKEAEL VQEAYHVPQS DTQFEDNIGQ PTWLAGESQA DDLDSLGETL LCKEIFGYST  300
LLNDSAPNPT DFNNNTYGVT GNSSTSCGIX DLENIELDSP PDFQLATVYL IGSTGYDDDE  360
RASGNDIEFP ILCNRRIHLT GLFSRILFSG NEANLALCNF SELMKCLGIG EEEGNEQSKA  420
LDSRLRPVAV RLKPSMFAAR KLNRHCFKSV SSLLQFNPPK NALLLRDVSA KVLSSNAVQP  480
SKPSEDCYSS SSRPANPFDG WSRSMSTSRG SSSMRSKVAK RMQKESGKTL REVRRAKKLQ  540
KKLMTENERL IYNLKRAKRK VALLLQKXKK YELPDLPAPR HDPELLTLEQ LQALKKIGFK  600
NKNYVPVGVR GVFGGVVQNM HLHWKFHETV QVCCDNFPKE KIKEMATMLA RLSGGIVALF  660
KARFEQALES QKLNIKKIEQ QLRRSGVNPE DPVAIASIQR VASSFFNAID QKDGSPYVFQ  720
GDKPSVAEHD NKLKHPEPPD EEEEEELDKF IAEIEDAAER EWAAEEAAEK EEFTRMRYWN  780
REEYGGRYRR SEEPENDDSD DEIPRPRXWR HNGKQRPNGD YEDDEEEWHS NNAVGASVLD  840
SDADDSDGTP EKFKISPRDX GRQDRIGRAK NDERFYRNSE ANNRKVNNRK IMVDDGTESE  900
NVLSDLDTAM WKSDSEEEHD STASRAANYD FQSSSDEEED LMYLKGGKER VNDSESNTDY  960
SNKARSKFEA SRVAEGRDDR IGRGNSEYFK RNAGVSPRRK PVEEDVKSED ISGDSENEIW  1020
ELNAASDSGA SKAGRFDYNS SDEEDYQVRR EEKKGNGNKS TRTRKXLDED WDSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341379.10.0PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic
RefseqXP_010108843.10.0NAC domain-containing protein 8
TrEMBLW9S0R60.0W9S0R6_9R
STRINGVIT_14s0066g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF982434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.11e-64NAC domain containing protein 44